WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T03G6.2c.1 Sequence Name  T03G6.2c.1
Length (nt)  1832   Chromosome Location  X: 2599408-2606732
Chromosome . Primary Identifier  X Chromosome Location . Start  2599408
Chromosome Location . End  2606732 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T03G6.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003630 nhr-40 T03G6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T03G6.2c T03G6.2c 1353   X: 2599429-2599489

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T03G6.2c.1 2599408 2606732 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226156   82   X: 2599408-2599489 Caenorhabditis elegans
Exon226158   119   X: 2600806-2600924 Caenorhabditis elegans
Exon226160   52   X: 2601750-2601801 Caenorhabditis elegans
Exon226162   66   X: 2601848-2601913 Caenorhabditis elegans
Exon226164   215   X: 2602550-2602764 Caenorhabditis elegans
Exon226166   116   X: 2602814-2602929 Caenorhabditis elegans
Exon226168   178   X: 2603306-2603483 Caenorhabditis elegans
Exon226170   91   X: 2604381-2604471 Caenorhabditis elegans
Exon226172   97   X: 2604525-2604621 Caenorhabditis elegans
Exon226174   110   X: 2604709-2604818 Caenorhabditis elegans
Exon226176   152   X: 2604981-2605132 Caenorhabditis elegans
Exon226178   554   X: 2606179-2606732 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T03G6.2c.1 2599408 2606732 1

1 Sequence

Length
1832

1 Sequence Ontology Term

Identifier Name Description
transcript