WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54G2.1g.1 Sequence Name  F54G2.1g.1
Length (nt)  4085   Chromosome Location  X: 2621274-2630890
Chromosome . Primary Identifier  X Chromosome Location . Start  2621274
Chromosome Location . End  2630890 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54G2.1g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018837 F54G2.1 F54G2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54G2.1g F54G2.1g 3432   X: 2621745-2621830

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F54G2.1g.1 2621274 2630890 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226148   557   X: 2621274-2621830 Caenorhabditis elegans
Exon226155   76   X: 2621881-2621956 Caenorhabditis elegans
Exon226160   112   X: 2622476-2622587 Caenorhabditis elegans
Exon226165   163   X: 2622634-2622796 Caenorhabditis elegans
Exon226170   82   X: 2622844-2622925 Caenorhabditis elegans
Exon226177   84   X: 2623625-2623708 Caenorhabditis elegans
Exon226182   240   X: 2624173-2624412 Caenorhabditis elegans
Exon226187   195   X: 2624460-2624654 Caenorhabditis elegans
Exon226192   114   X: 2624696-2624809 Caenorhabditis elegans
Exon226197   186   X: 2624860-2625045 Caenorhabditis elegans
Exon226202   69   X: 2625091-2625159 Caenorhabditis elegans
Exon226207   121   X: 2625207-2625327 Caenorhabditis elegans
Exon226212   690   X: 2625382-2626071 Caenorhabditis elegans
Exon226217   480   X: 2626513-2626992 Caenorhabditis elegans
Exon226222   215   X: 2627043-2627257 Caenorhabditis elegans
Exon226227   119   X: 2627428-2627546 Caenorhabditis elegans
Exon226232   67   X: 2627602-2627668 Caenorhabditis elegans
Exon226237   156   X: 2627945-2628100 Caenorhabditis elegans
Exon226242   127   X: 2629547-2629673 Caenorhabditis elegans
Exon226244   232   X: 2630659-2630890 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F54G2.1g.1 2621274 2630890 -1

1 Sequence

Length
4085

1 Sequence Ontology Term

Identifier Name Description
transcript