WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.5g.1 Sequence Name  T02C5.5g.1
Length (nt)  6851   Chromosome Location  X: 2710921-2736311
Chromosome . Primary Identifier  X Chromosome Location . Start  2710921
Chromosome Location . End  2736311 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.5g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006742 unc-2 T02C5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.5g T02C5.5g 6144   X: 2711628-2711798

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5g.1 2710921 2736311 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

28 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226472   878   X: 2710921-2711798 Caenorhabditis elegans
Exon226487   179   X: 2712355-2712533 Caenorhabditis elegans
Exon226503   150   X: 2712582-2712731 Caenorhabditis elegans
Exon226517   291   X: 2712787-2713077 Caenorhabditis elegans
Exon226531   121   X: 2713276-2713396 Caenorhabditis elegans
Exon226550   88   X: 2715092-2715179 Caenorhabditis elegans
Exon226564   101   X: 2716008-2716108 Caenorhabditis elegans
Exon226578   213   X: 2716157-2716369 Caenorhabditis elegans
Exon226596   89   X: 2716915-2717003 Caenorhabditis elegans
Exon226611   311   X: 2717108-2717418 Caenorhabditis elegans
Exon226626   653   X: 2717465-2718117 Caenorhabditis elegans
Exon226641   783   X: 2718804-2719586 Caenorhabditis elegans
Exon226656   106   X: 2719637-2719742 Caenorhabditis elegans
Exon226671   107   X: 2720170-2720276 Caenorhabditis elegans
Exon226686   287   X: 2720819-2721105 Caenorhabditis elegans
Exon226701   213   X: 2721155-2721367 Caenorhabditis elegans
Exon226716   121   X: 2721418-2721538 Caenorhabditis elegans
Exon226731   428   X: 2721584-2722011 Caenorhabditis elegans
Exon226746   128   X: 2722059-2722186 Caenorhabditis elegans
Exon226761   58   X: 2722642-2722699 Caenorhabditis elegans
Exon226780   203   X: 2723259-2723461 Caenorhabditis elegans
Exon226791   90   X: 2724083-2724172 Caenorhabditis elegans
Exon226806   193   X: 2724219-2724411 Caenorhabditis elegans
Exon226821   273   X: 2724464-2724736 Caenorhabditis elegans
Exon226836   128   X: 2724824-2724951 Caenorhabditis elegans
Exon226851   320   X: 2725442-2725761 Caenorhabditis elegans
Exon226864   97   X: 2730538-2730634 Caenorhabditis elegans
Exon226879   242   X: 2736070-2736311 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5g.1 2710921 2736311 -1

1 Sequence

Length
6851

1 Sequence Ontology Term

Identifier Name Description
transcript