WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.5c.1 Sequence Name  T02C5.5c.1
Length (nt)  6441   Chromosome Location  X: 2710923-2725632
Chromosome . Primary Identifier  X Chromosome Location . Start  2710923
Chromosome Location . End  2725632 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006742 unc-2 T02C5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.5c T02C5.5c 5736   X: 2711628-2711798

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5c.1 2710923 2725632 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

27 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226473   876   X: 2710923-2711798 Caenorhabditis elegans
Exon226491   185   X: 2712355-2712539 Caenorhabditis elegans
Exon226501   150   X: 2712582-2712731 Caenorhabditis elegans
Exon226515   291   X: 2712787-2713077 Caenorhabditis elegans
Exon226529   121   X: 2713276-2713396 Caenorhabditis elegans
Exon226542   54   X: 2714634-2714687 Caenorhabditis elegans
Exon226548   88   X: 2715092-2715179 Caenorhabditis elegans
Exon226562   101   X: 2716008-2716108 Caenorhabditis elegans
Exon226576   213   X: 2716157-2716369 Caenorhabditis elegans
Exon226594   89   X: 2716915-2717003 Caenorhabditis elegans
Exon226609   311   X: 2717108-2717418 Caenorhabditis elegans
Exon226624   653   X: 2717465-2718117 Caenorhabditis elegans
Exon226639   783   X: 2718804-2719586 Caenorhabditis elegans
Exon226654   106   X: 2719637-2719742 Caenorhabditis elegans
Exon226669   107   X: 2720170-2720276 Caenorhabditis elegans
Exon226684   287   X: 2720819-2721105 Caenorhabditis elegans
Exon226699   213   X: 2721155-2721367 Caenorhabditis elegans
Exon226714   121   X: 2721418-2721538 Caenorhabditis elegans
Exon226729   428   X: 2721584-2722011 Caenorhabditis elegans
Exon226744   128   X: 2722059-2722186 Caenorhabditis elegans
Exon226759   58   X: 2722642-2722699 Caenorhabditis elegans
Exon226778   203   X: 2723259-2723461 Caenorhabditis elegans
Exon226789   90   X: 2724083-2724172 Caenorhabditis elegans
Exon226804   193   X: 2724219-2724411 Caenorhabditis elegans
Exon226819   273   X: 2724464-2724736 Caenorhabditis elegans
Exon226834   128   X: 2724824-2724951 Caenorhabditis elegans
Exon226848   191   X: 2725442-2725632 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5c.1 2710923 2725632 -1

1 Sequence

Length
6441

1 Sequence Ontology Term

Identifier Name Description
transcript