WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.5f.1 Sequence Name  T02C5.5f.1
Length (nt)  6894   Chromosome Location  X: 2710932-2736311
Chromosome . Primary Identifier  X Chromosome Location . Start  2710932
Chromosome Location . End  2736311 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.5f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006742 unc-2 T02C5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.5f T02C5.5f 6198   X: 2711628-2711798

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5f.1 2710932 2736311 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226474   867   X: 2710932-2711798 Caenorhabditis elegans
Exon226486   179   X: 2712355-2712533 Caenorhabditis elegans
Exon226502   150   X: 2712582-2712731 Caenorhabditis elegans
Exon226516   291   X: 2712787-2713077 Caenorhabditis elegans
Exon226530   121   X: 2713276-2713396 Caenorhabditis elegans
Exon226543   54   X: 2714634-2714687 Caenorhabditis elegans
Exon226549   88   X: 2715092-2715179 Caenorhabditis elegans
Exon226563   101   X: 2716008-2716108 Caenorhabditis elegans
Exon226577   213   X: 2716157-2716369 Caenorhabditis elegans
Exon226595   89   X: 2716915-2717003 Caenorhabditis elegans
Exon226610   311   X: 2717108-2717418 Caenorhabditis elegans
Exon226625   653   X: 2717465-2718117 Caenorhabditis elegans
Exon226640   783   X: 2718804-2719586 Caenorhabditis elegans
Exon226655   106   X: 2719637-2719742 Caenorhabditis elegans
Exon226670   107   X: 2720170-2720276 Caenorhabditis elegans
Exon226685   287   X: 2720819-2721105 Caenorhabditis elegans
Exon226700   213   X: 2721155-2721367 Caenorhabditis elegans
Exon226715   121   X: 2721418-2721538 Caenorhabditis elegans
Exon226730   428   X: 2721584-2722011 Caenorhabditis elegans
Exon226745   128   X: 2722059-2722186 Caenorhabditis elegans
Exon226760   58   X: 2722642-2722699 Caenorhabditis elegans
Exon226779   203   X: 2723259-2723461 Caenorhabditis elegans
Exon226790   90   X: 2724083-2724172 Caenorhabditis elegans
Exon226805   193   X: 2724219-2724411 Caenorhabditis elegans
Exon226820   273   X: 2724464-2724736 Caenorhabditis elegans
Exon226835   128   X: 2724824-2724951 Caenorhabditis elegans
Exon226850   320   X: 2725442-2725761 Caenorhabditis elegans
Exon226863   97   X: 2730538-2730634 Caenorhabditis elegans
Exon226878   242   X: 2736070-2736311 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5f.1 2710932 2736311 -1

1 Sequence

Length
6894

1 Sequence Ontology Term

Identifier Name Description
transcript