WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.5q.1 Sequence Name  T02C5.5q.1
Length (nt)  5958   Chromosome Location  X: 2711628-2731426
Chromosome . Primary Identifier  X Chromosome Location . Start  2711628
Chromosome Location . End  2731426 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.5q.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006742 unc-2 T02C5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.5q T02C5.5q 5958   X: 2711628-2711798

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5q.1 2711628 2731426 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

28 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226475   171   X: 2711628-2711798 Caenorhabditis elegans
Exon226499   185   X: 2712355-2712539 Caenorhabditis elegans
Exon226513   150   X: 2712582-2712731 Caenorhabditis elegans
Exon226527   291   X: 2712787-2713077 Caenorhabditis elegans
Exon226541   121   X: 2713276-2713396 Caenorhabditis elegans
Exon226560   88   X: 2715092-2715179 Caenorhabditis elegans
Exon226574   101   X: 2716008-2716108 Caenorhabditis elegans
Exon226588   213   X: 2716157-2716369 Caenorhabditis elegans
Exon226606   89   X: 2716915-2717003 Caenorhabditis elegans
Exon226621   311   X: 2717108-2717418 Caenorhabditis elegans
Exon226636   653   X: 2717465-2718117 Caenorhabditis elegans
Exon226651   783   X: 2718804-2719586 Caenorhabditis elegans
Exon226666   106   X: 2719637-2719742 Caenorhabditis elegans
Exon226681   107   X: 2720170-2720276 Caenorhabditis elegans
Exon226696   287   X: 2720819-2721105 Caenorhabditis elegans
Exon226711   213   X: 2721155-2721367 Caenorhabditis elegans
Exon226726   121   X: 2721418-2721538 Caenorhabditis elegans
Exon226741   428   X: 2721584-2722011 Caenorhabditis elegans
Exon226756   128   X: 2722059-2722186 Caenorhabditis elegans
Exon226771   58   X: 2722642-2722699 Caenorhabditis elegans
Exon226776   227   X: 2723235-2723461 Caenorhabditis elegans
Exon226801   90   X: 2724083-2724172 Caenorhabditis elegans
Exon226816   193   X: 2724219-2724411 Caenorhabditis elegans
Exon226831   273   X: 2724464-2724736 Caenorhabditis elegans
Exon226846   128   X: 2724824-2724951 Caenorhabditis elegans
Exon226861   320   X: 2725442-2725761 Caenorhabditis elegans
Exon226874   97   X: 2730538-2730634 Caenorhabditis elegans
Exon226875   26   X: 2731401-2731426 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5q.1 2711628 2731426 -1

1 Sequence

Length
5958

1 Sequence Ontology Term

Identifier Name Description
transcript