WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.5h.1 Sequence Name  T02C5.5h.1
Length (nt)  6204   Chromosome Location  X: 2711628-2736311
Chromosome . Primary Identifier  X Chromosome Location . Start  2711628
Chromosome Location . End  2736311 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.5h.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006742 unc-2 T02C5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.5h T02C5.5h 6204   X: 2711628-2711798

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5h.1 2711628 2736311 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226476   171   X: 2711628-2711798 Caenorhabditis elegans
Exon226492   185   X: 2712355-2712539 Caenorhabditis elegans
Exon226504   150   X: 2712582-2712731 Caenorhabditis elegans
Exon226518   291   X: 2712787-2713077 Caenorhabditis elegans
Exon226532   121   X: 2713276-2713396 Caenorhabditis elegans
Exon226544   54   X: 2714634-2714687 Caenorhabditis elegans
Exon226551   88   X: 2715092-2715179 Caenorhabditis elegans
Exon226565   101   X: 2716008-2716108 Caenorhabditis elegans
Exon226579   213   X: 2716157-2716369 Caenorhabditis elegans
Exon226597   89   X: 2716915-2717003 Caenorhabditis elegans
Exon226612   311   X: 2717108-2717418 Caenorhabditis elegans
Exon226627   653   X: 2717465-2718117 Caenorhabditis elegans
Exon226642   783   X: 2718804-2719586 Caenorhabditis elegans
Exon226657   106   X: 2719637-2719742 Caenorhabditis elegans
Exon226672   107   X: 2720170-2720276 Caenorhabditis elegans
Exon226687   287   X: 2720819-2721105 Caenorhabditis elegans
Exon226702   213   X: 2721155-2721367 Caenorhabditis elegans
Exon226717   121   X: 2721418-2721538 Caenorhabditis elegans
Exon226732   428   X: 2721584-2722011 Caenorhabditis elegans
Exon226747   128   X: 2722059-2722186 Caenorhabditis elegans
Exon226762   58   X: 2722642-2722699 Caenorhabditis elegans
Exon226781   203   X: 2723259-2723461 Caenorhabditis elegans
Exon226792   90   X: 2724083-2724172 Caenorhabditis elegans
Exon226807   193   X: 2724219-2724411 Caenorhabditis elegans
Exon226822   273   X: 2724464-2724736 Caenorhabditis elegans
Exon226837   128   X: 2724824-2724951 Caenorhabditis elegans
Exon226852   320   X: 2725442-2725761 Caenorhabditis elegans
Exon226865   97   X: 2730538-2730634 Caenorhabditis elegans
Exon226880   242   X: 2736070-2736311 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5h.1 2711628 2736311 -1

1 Sequence

Length
6204

1 Sequence Ontology Term

Identifier Name Description
transcript