WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.5i.1 Sequence Name  T02C5.5i.1
Length (nt)  6150   Chromosome Location  X: 2711628-2736311
Chromosome . Primary Identifier  X Chromosome Location . Start  2711628
Chromosome Location . End  2736311 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.5i.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006742 unc-2 T02C5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.5i T02C5.5i 6150   X: 2711628-2711798

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5i.1 2711628 2736311 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

28 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226477   171   X: 2711628-2711798 Caenorhabditis elegans
Exon226493   185   X: 2712355-2712539 Caenorhabditis elegans
Exon226505   150   X: 2712582-2712731 Caenorhabditis elegans
Exon226519   291   X: 2712787-2713077 Caenorhabditis elegans
Exon226533   121   X: 2713276-2713396 Caenorhabditis elegans
Exon226552   88   X: 2715092-2715179 Caenorhabditis elegans
Exon226566   101   X: 2716008-2716108 Caenorhabditis elegans
Exon226580   213   X: 2716157-2716369 Caenorhabditis elegans
Exon226598   89   X: 2716915-2717003 Caenorhabditis elegans
Exon226613   311   X: 2717108-2717418 Caenorhabditis elegans
Exon226628   653   X: 2717465-2718117 Caenorhabditis elegans
Exon226643   783   X: 2718804-2719586 Caenorhabditis elegans
Exon226658   106   X: 2719637-2719742 Caenorhabditis elegans
Exon226673   107   X: 2720170-2720276 Caenorhabditis elegans
Exon226688   287   X: 2720819-2721105 Caenorhabditis elegans
Exon226703   213   X: 2721155-2721367 Caenorhabditis elegans
Exon226718   121   X: 2721418-2721538 Caenorhabditis elegans
Exon226733   428   X: 2721584-2722011 Caenorhabditis elegans
Exon226748   128   X: 2722059-2722186 Caenorhabditis elegans
Exon226763   58   X: 2722642-2722699 Caenorhabditis elegans
Exon226782   203   X: 2723259-2723461 Caenorhabditis elegans
Exon226793   90   X: 2724083-2724172 Caenorhabditis elegans
Exon226808   193   X: 2724219-2724411 Caenorhabditis elegans
Exon226823   273   X: 2724464-2724736 Caenorhabditis elegans
Exon226838   128   X: 2724824-2724951 Caenorhabditis elegans
Exon226853   320   X: 2725442-2725761 Caenorhabditis elegans
Exon226866   97   X: 2730538-2730634 Caenorhabditis elegans
Exon226881   242   X: 2736070-2736311 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5i.1 2711628 2736311 -1

1 Sequence

Length
6150

1 Sequence Ontology Term

Identifier Name Description
transcript