WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.5j.1 Sequence Name  T02C5.5j.1
Length (nt)  6003   Chromosome Location  X: 2711628-2743701
Chromosome . Primary Identifier  X Chromosome Location . Start  2711628
Chromosome Location . End  2743701 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.5j.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006742 unc-2 T02C5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.5j T02C5.5j 6003   X: 2711628-2711798

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5j.1 2711628 2743701 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226478   171   X: 2711628-2711798 Caenorhabditis elegans
Exon226488   179   X: 2712355-2712533 Caenorhabditis elegans
Exon226506   150   X: 2712582-2712731 Caenorhabditis elegans
Exon226520   291   X: 2712787-2713077 Caenorhabditis elegans
Exon226534   121   X: 2713276-2713396 Caenorhabditis elegans
Exon226545   54   X: 2714634-2714687 Caenorhabditis elegans
Exon226553   88   X: 2715092-2715179 Caenorhabditis elegans
Exon226567   101   X: 2716008-2716108 Caenorhabditis elegans
Exon226581   213   X: 2716157-2716369 Caenorhabditis elegans
Exon226599   89   X: 2716915-2717003 Caenorhabditis elegans
Exon226614   311   X: 2717108-2717418 Caenorhabditis elegans
Exon226629   653   X: 2717465-2718117 Caenorhabditis elegans
Exon226644   783   X: 2718804-2719586 Caenorhabditis elegans
Exon226659   106   X: 2719637-2719742 Caenorhabditis elegans
Exon226674   107   X: 2720170-2720276 Caenorhabditis elegans
Exon226689   287   X: 2720819-2721105 Caenorhabditis elegans
Exon226704   213   X: 2721155-2721367 Caenorhabditis elegans
Exon226719   121   X: 2721418-2721538 Caenorhabditis elegans
Exon226734   428   X: 2721584-2722011 Caenorhabditis elegans
Exon226749   128   X: 2722059-2722186 Caenorhabditis elegans
Exon226764   58   X: 2722642-2722699 Caenorhabditis elegans
Exon226783   203   X: 2723259-2723461 Caenorhabditis elegans
Exon226794   90   X: 2724083-2724172 Caenorhabditis elegans
Exon226809   193   X: 2724219-2724411 Caenorhabditis elegans
Exon226824   273   X: 2724464-2724736 Caenorhabditis elegans
Exon226839   128   X: 2724824-2724951 Caenorhabditis elegans
Exon226854   320   X: 2725442-2725761 Caenorhabditis elegans
Exon226867   97   X: 2730538-2730634 Caenorhabditis elegans
Exon226886   47   X: 2743655-2743701 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5j.1 2711628 2743701 -1

1 Sequence

Length
6003

1 Sequence Ontology Term

Identifier Name Description
transcript