WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.5k.1 Sequence Name  T02C5.5k.1
Length (nt)  5949   Chromosome Location  X: 2711628-2743701
Chromosome . Primary Identifier  X Chromosome Location . Start  2711628
Chromosome Location . End  2743701 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.5k.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006742 unc-2 T02C5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.5k T02C5.5k 5949   X: 2711628-2711798

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5k.1 2711628 2743701 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

28 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226479   171   X: 2711628-2711798 Caenorhabditis elegans
Exon226489   179   X: 2712355-2712533 Caenorhabditis elegans
Exon226507   150   X: 2712582-2712731 Caenorhabditis elegans
Exon226521   291   X: 2712787-2713077 Caenorhabditis elegans
Exon226535   121   X: 2713276-2713396 Caenorhabditis elegans
Exon226554   88   X: 2715092-2715179 Caenorhabditis elegans
Exon226568   101   X: 2716008-2716108 Caenorhabditis elegans
Exon226582   213   X: 2716157-2716369 Caenorhabditis elegans
Exon226600   89   X: 2716915-2717003 Caenorhabditis elegans
Exon226615   311   X: 2717108-2717418 Caenorhabditis elegans
Exon226630   653   X: 2717465-2718117 Caenorhabditis elegans
Exon226645   783   X: 2718804-2719586 Caenorhabditis elegans
Exon226660   106   X: 2719637-2719742 Caenorhabditis elegans
Exon226675   107   X: 2720170-2720276 Caenorhabditis elegans
Exon226690   287   X: 2720819-2721105 Caenorhabditis elegans
Exon226705   213   X: 2721155-2721367 Caenorhabditis elegans
Exon226720   121   X: 2721418-2721538 Caenorhabditis elegans
Exon226735   428   X: 2721584-2722011 Caenorhabditis elegans
Exon226750   128   X: 2722059-2722186 Caenorhabditis elegans
Exon226765   58   X: 2722642-2722699 Caenorhabditis elegans
Exon226784   203   X: 2723259-2723461 Caenorhabditis elegans
Exon226795   90   X: 2724083-2724172 Caenorhabditis elegans
Exon226810   193   X: 2724219-2724411 Caenorhabditis elegans
Exon226825   273   X: 2724464-2724736 Caenorhabditis elegans
Exon226840   128   X: 2724824-2724951 Caenorhabditis elegans
Exon226855   320   X: 2725442-2725761 Caenorhabditis elegans
Exon226868   97   X: 2730538-2730634 Caenorhabditis elegans
Exon226887   47   X: 2743655-2743701 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5k.1 2711628 2743701 -1

1 Sequence

Length
5949

1 Sequence Ontology Term

Identifier Name Description
transcript