WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.5l.1 Sequence Name  T02C5.5l.1
Length (nt)  6009   Chromosome Location  X: 2711628-2743701
Chromosome . Primary Identifier  X Chromosome Location . Start  2711628
Chromosome Location . End  2743701 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.5l.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006742 unc-2 T02C5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.5l T02C5.5l 6009   X: 2711628-2711798

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5l.1 2711628 2743701 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226480   171   X: 2711628-2711798 Caenorhabditis elegans
Exon226494   185   X: 2712355-2712539 Caenorhabditis elegans
Exon226508   150   X: 2712582-2712731 Caenorhabditis elegans
Exon226522   291   X: 2712787-2713077 Caenorhabditis elegans
Exon226536   121   X: 2713276-2713396 Caenorhabditis elegans
Exon226546   54   X: 2714634-2714687 Caenorhabditis elegans
Exon226555   88   X: 2715092-2715179 Caenorhabditis elegans
Exon226569   101   X: 2716008-2716108 Caenorhabditis elegans
Exon226583   213   X: 2716157-2716369 Caenorhabditis elegans
Exon226601   89   X: 2716915-2717003 Caenorhabditis elegans
Exon226616   311   X: 2717108-2717418 Caenorhabditis elegans
Exon226631   653   X: 2717465-2718117 Caenorhabditis elegans
Exon226646   783   X: 2718804-2719586 Caenorhabditis elegans
Exon226661   106   X: 2719637-2719742 Caenorhabditis elegans
Exon226676   107   X: 2720170-2720276 Caenorhabditis elegans
Exon226691   287   X: 2720819-2721105 Caenorhabditis elegans
Exon226706   213   X: 2721155-2721367 Caenorhabditis elegans
Exon226721   121   X: 2721418-2721538 Caenorhabditis elegans
Exon226736   428   X: 2721584-2722011 Caenorhabditis elegans
Exon226751   128   X: 2722059-2722186 Caenorhabditis elegans
Exon226766   58   X: 2722642-2722699 Caenorhabditis elegans
Exon226785   203   X: 2723259-2723461 Caenorhabditis elegans
Exon226796   90   X: 2724083-2724172 Caenorhabditis elegans
Exon226811   193   X: 2724219-2724411 Caenorhabditis elegans
Exon226826   273   X: 2724464-2724736 Caenorhabditis elegans
Exon226841   128   X: 2724824-2724951 Caenorhabditis elegans
Exon226856   320   X: 2725442-2725761 Caenorhabditis elegans
Exon226869   97   X: 2730538-2730634 Caenorhabditis elegans
Exon226888   47   X: 2743655-2743701 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5l.1 2711628 2743701 -1

1 Sequence

Length
6009

1 Sequence Ontology Term

Identifier Name Description
transcript