WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.5p.1 Sequence Name  T02C5.5p.1
Length (nt)  6516   Chromosome Location  X: 2711628-2763526
Chromosome . Primary Identifier  X Chromosome Location . Start  2711628
Chromosome Location . End  2763526 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.5p.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006742 unc-2 T02C5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.5p T02C5.5p 6516   X: 2711628-2711798

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5p.1 2711628 2763526 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

34 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226484   171   X: 2711628-2711798 Caenorhabditis elegans
Exon226498   185   X: 2712355-2712539 Caenorhabditis elegans
Exon226512   150   X: 2712582-2712731 Caenorhabditis elegans
Exon226526   291   X: 2712787-2713077 Caenorhabditis elegans
Exon226540   121   X: 2713276-2713396 Caenorhabditis elegans
Exon226559   88   X: 2715092-2715179 Caenorhabditis elegans
Exon226573   101   X: 2716008-2716108 Caenorhabditis elegans
Exon226587   213   X: 2716157-2716369 Caenorhabditis elegans
Exon226605   89   X: 2716915-2717003 Caenorhabditis elegans
Exon226620   311   X: 2717108-2717418 Caenorhabditis elegans
Exon226635   653   X: 2717465-2718117 Caenorhabditis elegans
Exon226650   783   X: 2718804-2719586 Caenorhabditis elegans
Exon226665   106   X: 2719637-2719742 Caenorhabditis elegans
Exon226680   107   X: 2720170-2720276 Caenorhabditis elegans
Exon226695   287   X: 2720819-2721105 Caenorhabditis elegans
Exon226710   213   X: 2721155-2721367 Caenorhabditis elegans
Exon226725   121   X: 2721418-2721538 Caenorhabditis elegans
Exon226740   428   X: 2721584-2722011 Caenorhabditis elegans
Exon226755   128   X: 2722059-2722186 Caenorhabditis elegans
Exon226770   58   X: 2722642-2722699 Caenorhabditis elegans
Exon226775   227   X: 2723235-2723461 Caenorhabditis elegans
Exon226800   90   X: 2724083-2724172 Caenorhabditis elegans
Exon226815   193   X: 2724219-2724411 Caenorhabditis elegans
Exon226830   273   X: 2724464-2724736 Caenorhabditis elegans
Exon226845   128   X: 2724824-2724951 Caenorhabditis elegans
Exon226860   320   X: 2725442-2725761 Caenorhabditis elegans
Exon226873   97   X: 2730538-2730634 Caenorhabditis elegans
Exon226892   87   X: 2743655-2743741 Caenorhabditis elegans
Exon226896   170   X: 2747807-2747976 Caenorhabditis elegans
Exon226901   65   X: 2756287-2756351 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5p.1 2711628 2763526 -1

1 Sequence

Length
6516

1 Sequence Ontology Term

Identifier Name Description
transcript