WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y71H10B.1a.2 Sequence Name  Y71H10B.1a.2
Length (nt)  2207   Chromosome Location  X: 2834205-2840292
Chromosome . Primary Identifier  X Chromosome Location . Start  2834205
Chromosome Location . End  2840292 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71H10B.1a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022201 ntfc-1 Y71H10B.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71H10B.1a Y71H10B.1a 1671   X: 2834614-2834739

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71H10B.1a.2 2834205 2840292 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227017   535   X: 2834205-2834739 Caenorhabditis elegans
Exon227022   271   X: 2834960-2835230 Caenorhabditis elegans
Exon227026   95   X: 2836039-2836133 Caenorhabditis elegans
Exon227030   609   X: 2836189-2836797 Caenorhabditis elegans
Exon227034   100   X: 2836848-2836947 Caenorhabditis elegans
Exon227038   147   X: 2837000-2837146 Caenorhabditis elegans
Exon227042   94   X: 2837193-2837286 Caenorhabditis elegans
Exon227046   120   X: 2837744-2837863 Caenorhabditis elegans
Exon227051   74   X: 2837917-2837990 Caenorhabditis elegans
Exon227054   108   X: 2838546-2838653 Caenorhabditis elegans
Exon227055   54   X: 2840239-2840292 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71H10B.1a.2 2834205 2840292 -1

1 Sequence

Length
2207

1 Sequence Ontology Term

Identifier Name Description
transcript