WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53B3.2.1 Sequence Name  F53B3.2.1
Length (nt)  2049   Chromosome Location  X: 2858063-2862472
Chromosome . Primary Identifier  X Chromosome Location . Start  2858063
Chromosome Location . End  2862472 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53B3.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018741 comt-1 F53B3.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53B3.2 F53B3.2 1905   X: 2858166-2858222

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53B3.2.1 2858063 2862472 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227090   160   X: 2858063-2858222 Caenorhabditis elegans
Exon227092   99   X: 2858533-2858631 Caenorhabditis elegans
Exon227093   326   X: 2858683-2859008 Caenorhabditis elegans
Exon227094   124   X: 2859300-2859423 Caenorhabditis elegans
Exon227095   116   X: 2859467-2859582 Caenorhabditis elegans
Exon227096   82   X: 2859659-2859740 Caenorhabditis elegans
Exon227097   232   X: 2859798-2860029 Caenorhabditis elegans
Exon227098   304   X: 2861139-2861442 Caenorhabditis elegans
Exon227099   390   X: 2861767-2862156 Caenorhabditis elegans
Exon227100   100   X: 2862206-2862305 Caenorhabditis elegans
Exon227101   116   X: 2862357-2862472 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53B3.2.1 2858063 2862472 -1

1 Sequence

Length
2049

1 Sequence Ontology Term

Identifier Name Description
transcript