WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52B10.1b.1 Sequence Name  F52B10.1b.1
Length (nt)  6398   Chromosome Location  X: 2909528-2918044
Chromosome . Primary Identifier  X Chromosome Location . Start  2909528
Chromosome Location . End  2918044 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52B10.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003776 nmy-1 F52B10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52B10.1b F52B10.1b 5871   X: 2909556-2909686

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F52B10.1b.1 2909528 2918044 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227137   159   X: 2909528-2909686 Caenorhabditis elegans
Exon227139   193   X: 2909735-2909927 Caenorhabditis elegans
Exon227141   157   X: 2909975-2910131 Caenorhabditis elegans
Exon227143   152   X: 2910189-2910340 Caenorhabditis elegans
Exon227146   93   X: 2911111-2911203 Caenorhabditis elegans
Exon227148   163   X: 2911259-2911421 Caenorhabditis elegans
Exon227150   144   X: 2911889-2912032 Caenorhabditis elegans
Exon227152   474   X: 2912082-2912555 Caenorhabditis elegans
Exon227154   1121   X: 2912610-2913730 Caenorhabditis elegans
Exon227156   195   X: 2913787-2913981 Caenorhabditis elegans
Exon227158   578   X: 2914027-2914604 Caenorhabditis elegans
Exon227160   115   X: 2914751-2914865 Caenorhabditis elegans
Exon227162   312   X: 2914916-2915227 Caenorhabditis elegans
Exon227164   690   X: 2915276-2915965 Caenorhabditis elegans
Exon227166   1056   X: 2916020-2917075 Caenorhabditis elegans
Exon227168   161   X: 2917153-2917313 Caenorhabditis elegans
Exon227170   101   X: 2917357-2917457 Caenorhabditis elegans
Exon227172   534   X: 2917511-2918044 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F52B10.1b.1 2909528 2918044 1

1 Sequence

Length
6398

1 Sequence Ontology Term

Identifier Name Description
transcript