WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y41G9A.4d.1 Sequence Name  Y41G9A.4d.1
Length (nt)  2601   Chromosome Location  X: 2957953-2967708
Chromosome . Primary Identifier  X Chromosome Location . Start  2957953
Chromosome Location . End  2967708 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y41G9A.4d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021528 gbb-1 Y41G9A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y41G9A.4d Y41G9A.4d 2601   X: 2957953-2958180

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y41G9A.4d.1 2957953 2967708 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227292   228   X: 2957953-2958180 Caenorhabditis elegans
Exon227296   135   X: 2958705-2958839 Caenorhabditis elegans
Exon227300   98   X: 2958893-2958990 Caenorhabditis elegans
Exon227304   91   X: 2959036-2959126 Caenorhabditis elegans
Exon227308   147   X: 2959178-2959324 Caenorhabditis elegans
Exon227312   114   X: 2959639-2959752 Caenorhabditis elegans
Exon227316   182   X: 2959803-2959984 Caenorhabditis elegans
Exon227320   139   X: 2960179-2960317 Caenorhabditis elegans
Exon227324   207   X: 2960366-2960572 Caenorhabditis elegans
Exon227328   89   X: 2961338-2961426 Caenorhabditis elegans
Exon227331   139   X: 2961476-2961614 Caenorhabditis elegans
Exon227335   126   X: 2962562-2962687 Caenorhabditis elegans
Exon227336   33   X: 2962805-2962837 Caenorhabditis elegans
Exon227340   123   X: 2966250-2966372 Caenorhabditis elegans
Exon227343   82   X: 2966418-2966499 Caenorhabditis elegans
Exon227346   213   X: 2966544-2966756 Caenorhabditis elegans
Exon227350   194   X: 2967108-2967301 Caenorhabditis elegans
Exon227354   112   X: 2967350-2967461 Caenorhabditis elegans
Exon227358   81   X: 2967511-2967591 Caenorhabditis elegans
Exon227360   68   X: 2967641-2967708 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y41G9A.4d.1 2957953 2967708 1

1 Sequence

Length
2601

1 Sequence Ontology Term

Identifier Name Description
transcript