WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y41G9A.1.1 Sequence Name  Y41G9A.1.1
Length (nt)  2605   Chromosome Location  X: 2984263-2991478
Chromosome . Primary Identifier  X Chromosome Location . Start  2984263
Chromosome Location . End  2991478 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y41G9A.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003885 osm-5 Y41G9A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y41G9A.1 Y41G9A.1 2463   X: 2984278-2984358

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y41G9A.1.1 2984263 2991478 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227384   96   X: 2984263-2984358 Caenorhabditis elegans
Exon227385   63   X: 2984952-2985014 Caenorhabditis elegans
Exon227386   70   X: 2985363-2985432 Caenorhabditis elegans
Exon227387   105   X: 2985484-2985588 Caenorhabditis elegans
Exon227388   46   X: 2985639-2985684 Caenorhabditis elegans
Exon227389   310   X: 2985735-2986044 Caenorhabditis elegans
Exon227390   226   X: 2986454-2986679 Caenorhabditis elegans
Exon227391   238   X: 2986726-2986963 Caenorhabditis elegans
Exon227392   208   X: 2987386-2987593 Caenorhabditis elegans
Exon227393   302   X: 2987915-2988216 Caenorhabditis elegans
Exon227394   151   X: 2988263-2988413 Caenorhabditis elegans
Exon227395   116   X: 2989319-2989434 Caenorhabditis elegans
Exon227396   204   X: 2989514-2989717 Caenorhabditis elegans
Exon227397   212   X: 2989767-2989978 Caenorhabditis elegans
Exon227399   258   X: 2991221-2991478 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y41G9A.1.1 2984263 2991478 1

1 Sequence

Length
2605

1 Sequence Ontology Term

Identifier Name Description
transcript