WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00166186 Gene Name  21ur-12946
Sequence Name  ? Y41G9A.12 Organism  Caenorhabditis elegans
Automated Description  Is affected by lag-1 based on RNA-seq studies. Biotype  SO:0001638
Genetic Position  X :-12.6614± Length (nt)  ? 21
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00166186

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y41G9A.12 Y41G9A.12 21   X: 2995822-2995842
 

Other

0 CDSs

0 RNAi Result

5 Allele

Public Name
gk963725
WBVar02123482
WBVar02123427
WBVar02123428
gk963565

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00166186 2995822 2995842 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_2991479..2995821   4343 X: 2991479-2995821 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts interacting with LAG-1 at L4 larva stage in whole animal ChIP-Seq analysis. edgeR fold change >= 2, FDR <= 0.05. WBPaper00059440:LAG-1_interacting_WholeAnimal

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00166186 2995822 2995842 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
21

1 Sequence Ontology Term