WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C33D12.6.1 Sequence Name  C33D12.6.1
Length (nt)  2184   Chromosome Location  X: 3055156-3059399
Chromosome . Primary Identifier  X Chromosome Location . Start  3055156
Chromosome Location . End  3059399 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C33D12.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016344 rsef-1 C33D12.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C33D12.6 C33D12.6 1905   X: 3055421-3055526

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C33D12.6.1 3055156 3059399 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227601   371   X: 3055156-3055526 Caenorhabditis elegans
Exon227602   77   X: 3055575-3055651 Caenorhabditis elegans
Exon227603   441   X: 3055710-3056150 Caenorhabditis elegans
Exon227604   71   X: 3056603-3056673 Caenorhabditis elegans
Exon227605   203   X: 3056739-3056941 Caenorhabditis elegans
Exon227606   61   X: 3056987-3057047 Caenorhabditis elegans
Exon227607   136   X: 3057093-3057228 Caenorhabditis elegans
Exon227608   165   X: 3057297-3057461 Caenorhabditis elegans
Exon227609   91   X: 3057505-3057595 Caenorhabditis elegans
Exon227610   150   X: 3058109-3058258 Caenorhabditis elegans
Exon227611   187   X: 3058301-3058487 Caenorhabditis elegans
Exon227612   109   X: 3058533-3058641 Caenorhabditis elegans
Exon227613   122   X: 3059278-3059399 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C33D12.6.1 3055156 3059399 -1

1 Sequence

Length
2184

1 Sequence Ontology Term

Identifier Name Description
transcript