WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52E4.7.1 Sequence Name  F52E4.7.1
Length (nt)  2805   Chromosome Location  X: 3095428-3099852
Chromosome . Primary Identifier  X Chromosome Location . Start  3095428
Chromosome Location . End  3099852 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52E4.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018703 sec-3 F52E4.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52E4.7 F52E4.7 2547   X: 3095671-3095922

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52E4.7.1 3095428 3099852 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227614   495   X: 3095428-3095922 Caenorhabditis elegans
Exon227615   99   X: 3095972-3096070 Caenorhabditis elegans
Exon227616   125   X: 3096522-3096646 Caenorhabditis elegans
Exon227617   262   X: 3096695-3096956 Caenorhabditis elegans
Exon227618   127   X: 3097005-3097131 Caenorhabditis elegans
Exon227619   355   X: 3097181-3097535 Caenorhabditis elegans
Exon227620   247   X: 3097582-3097828 Caenorhabditis elegans
Exon227622   172   X: 3098138-3098309 Caenorhabditis elegans
Exon227623   173   X: 3098357-3098529 Caenorhabditis elegans
Exon227624   378   X: 3098579-3098956 Caenorhabditis elegans
Exon227625   99   X: 3099008-3099106 Caenorhabditis elegans
Exon227626   128   X: 3099534-3099661 Caenorhabditis elegans
Exon227627   145   X: 3099708-3099852 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52E4.7.1 3095428 3099852 -1

1 Sequence

Length
2805

1 Sequence Ontology Term

Identifier Name Description
transcript