WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K10B3.6a.1 Sequence Name  K10B3.6a.1
Length (nt)  2107   Chromosome Location  X: 3106535-3110628
Chromosome . Primary Identifier  X Chromosome Location . Start  3106535
Chromosome Location . End  3110628 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K10B3.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019612 gpcp-1 K10B3.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K10B3.6a K10B3.6a 1995   X: 3106634-3106769

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K10B3.6a.1 3106535 3110628 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227646   235   X: 3106535-3106769 Caenorhabditis elegans
Exon227649   131   X: 3106816-3106946 Caenorhabditis elegans
Exon227651   93   X: 3107795-3107887 Caenorhabditis elegans
Exon227653   76   X: 3107937-3108012 Caenorhabditis elegans
Exon227655   131   X: 3108247-3108377 Caenorhabditis elegans
Exon227657   216   X: 3108425-3108640 Caenorhabditis elegans
Exon227659   123   X: 3108691-3108813 Caenorhabditis elegans
Exon227662   94   X: 3108931-3109024 Caenorhabditis elegans
Exon227664   145   X: 3109069-3109213 Caenorhabditis elegans
Exon227666   139   X: 3109257-3109395 Caenorhabditis elegans
Exon227669   114   X: 3109449-3109562 Caenorhabditis elegans
Exon227672   69   X: 3109620-3109688 Caenorhabditis elegans
Exon227676   158   X: 3109942-3110099 Caenorhabditis elegans
Exon227679   98   X: 3110145-3110242 Caenorhabditis elegans
Exon227682   126   X: 3110303-3110428 Caenorhabditis elegans
Exon227687   159   X: 3110470-3110628 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K10B3.6a.1 3106535 3110628 -1

1 Sequence

Length
2107

1 Sequence Ontology Term

Identifier Name Description
transcript