WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F28B4.3.1 Sequence Name  F28B4.3.1
Length (nt)  6742   Chromosome Location  X: 3227501-3235408
Chromosome . Primary Identifier  X Chromosome Location . Start  3227501
Chromosome Location . End  3235408 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F28B4.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017892 hrg-11.2 F28B4.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F28B4.3 F28B4.3 6690   X: 3227551-3227584

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F28B4.3.1 3227501 3235408 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

23 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227950   84   X: 3227501-3227584 Caenorhabditis elegans
Exon227951   204   X: 3227632-3227835 Caenorhabditis elegans
Exon227952   317   X: 3227882-3228198 Caenorhabditis elegans
Exon227953   84   X: 3228245-3228328 Caenorhabditis elegans
Exon227954   182   X: 3228374-3228555 Caenorhabditis elegans
Exon227955   157   X: 3228599-3228755 Caenorhabditis elegans
Exon227956   344   X: 3228801-3229144 Caenorhabditis elegans
Exon227957   187   X: 3229191-3229377 Caenorhabditis elegans
Exon227958   132   X: 3229422-3229553 Caenorhabditis elegans
Exon227959   139   X: 3229605-3229743 Caenorhabditis elegans
Exon227960   118   X: 3229790-3229907 Caenorhabditis elegans
Exon227961   189   X: 3229951-3230139 Caenorhabditis elegans
Exon227962   2809   X: 3230191-3232999 Caenorhabditis elegans
Exon227963   144   X: 3233044-3233187 Caenorhabditis elegans
Exon227964   121   X: 3233241-3233361 Caenorhabditis elegans
Exon227965   118   X: 3233417-3233534 Caenorhabditis elegans
Exon227966   192   X: 3233626-3233817 Caenorhabditis elegans
Exon227967   72   X: 3233861-3233932 Caenorhabditis elegans
Exon227968   171   X: 3234077-3234247 Caenorhabditis elegans
Exon227969   61   X: 3234293-3234353 Caenorhabditis elegans
Exon227970   623   X: 3234398-3235020 Caenorhabditis elegans
Exon227971   112   X: 3235070-3235181 Caenorhabditis elegans
Exon227972   182   X: 3235227-3235408 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F28B4.3.1 3227501 3235408 -1

1 Sequence

Length
6742

1 Sequence Ontology Term

Identifier Name Description
transcript