WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F11D5.3a.1 Sequence Name  F11D5.3a.1
Length (nt)  2705   Chromosome Location  X: 3315314-3324242
Chromosome . Primary Identifier  X Chromosome Location . Start  3315314
Chromosome Location . End  3324242 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F11D5.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017381 ddr-2 F11D5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F11D5.3a F11D5.3a 2394   X: 3315347-3315413

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F11D5.3a.1 3315314 3324242 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon228155   100   X: 3315314-3315413 Caenorhabditis elegans
Exon228162   106   X: 3317856-3317961 Caenorhabditis elegans
Exon228166   98   X: 3319178-3319275 Caenorhabditis elegans
Exon228169   134   X: 3319325-3319458 Caenorhabditis elegans
Exon228174   148   X: 3321028-3321175 Caenorhabditis elegans
Exon228177   290   X: 3321285-3321574 Caenorhabditis elegans
Exon228180   313   X: 3321619-3321931 Caenorhabditis elegans
Exon228183   268   X: 3321985-3322252 Caenorhabditis elegans
Exon228186   72   X: 3322472-3322543 Caenorhabditis elegans
Exon228189   227   X: 3322592-3322818 Caenorhabditis elegans
Exon228192   130   X: 3322868-3322997 Caenorhabditis elegans
Exon228195   78   X: 3323045-3323122 Caenorhabditis elegans
Exon228198   307   X: 3323452-3323758 Caenorhabditis elegans
Exon228203   434   X: 3323809-3324242 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F11D5.3a.1 3315314 3324242 1

1 Sequence

Length
2705

1 Sequence Ontology Term

Identifier Name Description
transcript