WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F11D5.3b.1 Sequence Name  F11D5.3b.1
Length (nt)  3313   Chromosome Location  X: 3317056-3324150
Chromosome . Primary Identifier  X Chromosome Location . Start  3317056
Chromosome Location . End  3324150 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F11D5.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017381 ddr-2 F11D5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F11D5.3b F11D5.3b 2304   X: 3317879-3317961

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F11D5.3b.1 3317056 3324150 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon228158   906   X: 3317056-3317961 Caenorhabditis elegans
Exon228167   98   X: 3319178-3319275 Caenorhabditis elegans
Exon228170   134   X: 3319325-3319458 Caenorhabditis elegans
Exon228175   148   X: 3321028-3321175 Caenorhabditis elegans
Exon228178   290   X: 3321285-3321574 Caenorhabditis elegans
Exon228181   313   X: 3321619-3321931 Caenorhabditis elegans
Exon228184   268   X: 3321985-3322252 Caenorhabditis elegans
Exon228187   72   X: 3322472-3322543 Caenorhabditis elegans
Exon228190   227   X: 3322592-3322818 Caenorhabditis elegans
Exon228193   130   X: 3322868-3322997 Caenorhabditis elegans
Exon228196   78   X: 3323045-3323122 Caenorhabditis elegans
Exon228199   307   X: 3323452-3323758 Caenorhabditis elegans
Exon228202   342   X: 3323809-3324150 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F11D5.3b.1 3317056 3324150 1

1 Sequence

Length
3313

1 Sequence Ontology Term

Identifier Name Description
transcript