WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F11D5.3b.2 Sequence Name  F11D5.3b.2
Length (nt)  2466   Chromosome Location  X: 3317667-3323964
Chromosome . Primary Identifier  X Chromosome Location . Start  3317667
Chromosome Location . End  3323964 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F11D5.3b.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017381 ddr-2 F11D5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F11D5.3b F11D5.3b 2304   X: 3317879-3317961

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F11D5.3b.2 3317667 3323964 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon228161   139   X: 3317667-3317805 Caenorhabditis elegans
Exon228163   106   X: 3317856-3317961 Caenorhabditis elegans
Exon228168   98   X: 3319178-3319275 Caenorhabditis elegans
Exon228171   134   X: 3319325-3319458 Caenorhabditis elegans
Exon228176   148   X: 3321028-3321175 Caenorhabditis elegans
Exon228179   290   X: 3321285-3321574 Caenorhabditis elegans
Exon228182   313   X: 3321619-3321931 Caenorhabditis elegans
Exon228185   268   X: 3321985-3322252 Caenorhabditis elegans
Exon228188   72   X: 3322472-3322543 Caenorhabditis elegans
Exon228191   227   X: 3322592-3322818 Caenorhabditis elegans
Exon228194   130   X: 3322868-3322997 Caenorhabditis elegans
Exon228197   78   X: 3323045-3323122 Caenorhabditis elegans
Exon228200   307   X: 3323452-3323758 Caenorhabditis elegans
Exon228201   156   X: 3323809-3323964 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F11D5.3b.2 3317667 3323964 1

1 Sequence

Length
2466

1 Sequence Ontology Term

Identifier Name Description
transcript