WormMine: Gene WBGene00003364

• WormBase Gene ID: WBGene00003364
• Gene Name: mir-271
• Sequence Name: C04F6.6
• Brief Description: mir-271 encodes a microRNA, a small non-protein coding RNA; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-271 is unknown.
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by silicon dioxide nanoparticle based on microarray studies.
• Biotype: SO:0001265
• Genetic Position: X :-10.3429±
• Length (nt): 94

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00003364

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:C04F6.6a	C04F6.6a	20	X: 3412027-3412046

Other

0 CDSs

0 RNAi Result

9 Allele

• gk963725
• gk964260
• gk963797
• gk963798
• otn11632
• otn13526
• gk963370
• gk757148
• gk541978

1 Chromosome

• WormBase ID: X
• Organism: Caenorhabditis elegans
• Length (nt): 17718942

1 Chromosome Location

• Feature . Primary Identifier: WBGene00003364
• Start: 3412004
• End: 3412097
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
Fungi infection: Fusarium oxysporum	Transcripts that showed significantly altered expression after infected by fungi Fusarium oxysporum from 0 t0 48 hours.	The Benjamini and Hochberg approach was used to adjust the resulting P-values for controlling the false-discovery rate. The transcripts having a false-discovery rate of < 0.05 were considered as differentially expressed.	WBPaper00053368:F.oxysporum_regulated
	Micro RNAs that showed significantly increased expression in animals after 24 hour exposure to 100ug per ml silica nanoparticles (SiNPs).	The random variance model (RVM)t-test was applied toidentify differentially expressed mRNAs and miRNAsbetween the SiNPs-treated group and the control group. P-value <0.05 and fold change (FC) >1.5 were considered as the threshold screening between the SiNP-treated groupand the control group.	WBPaper00060100:SiNP_upregulated_miRNA

2 Expression Patterns

• Primary Identifier: Expr8444
• Remark: Picture: N.A.
• Pattern: No expression detected.

• Primary Identifier: Expr10977

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00003364
• Start: 3412004
• End: 3412097
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 94

1 Sequence Ontology Term