WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK377.2b.1 Sequence Name  ZK377.2b.1
Length (nt)  4495   Chromosome Location  X: 3451908-3465927
Chromosome . Primary Identifier  X Chromosome Location . Start  3451908
Chromosome Location . End  3465927 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK377.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004729 sax-3 ZK377.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK377.2b ZK377.2b 3822   X: 3452496-3452572

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZK377.2b.1 3451908 3465927 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon228440   665   X: 3451908-3452572 Caenorhabditis elegans
Exon228443   322   X: 3452618-3452939 Caenorhabditis elegans
Exon228445   135   X: 3452982-3453116 Caenorhabditis elegans
Exon228447   749   X: 3453230-3453978 Caenorhabditis elegans
Exon228449   288   X: 3454038-3454325 Caenorhabditis elegans
Exon228451   794   X: 3454379-3455172 Caenorhabditis elegans
Exon228453   217   X: 3455231-3455447 Caenorhabditis elegans
Exon228458   386   X: 3461318-3461703 Caenorhabditis elegans
Exon228460   164   X: 3462336-3462499 Caenorhabditis elegans
Exon228462   261   X: 3462705-3462965 Caenorhabditis elegans
Exon228464   356   X: 3463510-3463865 Caenorhabditis elegans
Exon228466   158   X: 3465770-3465927 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZK377.2b.1 3451908 3465927 -1

1 Sequence

Length
4495

1 Sequence Ontology Term

Identifier Name Description
transcript