WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK377.2a.1 Sequence Name  ZK377.2a.1
Length (nt)  4452   Chromosome Location  X: 3451937-3465925
Chromosome . Primary Identifier  X Chromosome Location . Start  3451937
Chromosome Location . End  3465925 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK377.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004729 sax-3 ZK377.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK377.2a ZK377.2a 3810   X: 3452496-3452572

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZK377.2a.1 3451937 3465925 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon228495   636   X: 3451937-3452572 Caenorhabditis elegans
Exon228496   310   X: 3452618-3452927 Caenorhabditis elegans
Exon228498   135   X: 3452982-3453116 Caenorhabditis elegans
Exon228500   749   X: 3453230-3453978 Caenorhabditis elegans
Exon228502   288   X: 3454038-3454325 Caenorhabditis elegans
Exon228504   794   X: 3454379-3455172 Caenorhabditis elegans
Exon228506   217   X: 3455231-3455447 Caenorhabditis elegans
Exon228511   386   X: 3461318-3461703 Caenorhabditis elegans
Exon228513   164   X: 3462336-3462499 Caenorhabditis elegans
Exon228515   261   X: 3462705-3462965 Caenorhabditis elegans
Exon228517   356   X: 3463510-3463865 Caenorhabditis elegans
Exon228519   156   X: 3465770-3465925 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZK377.2a.1 3451937 3465925 -1

1 Sequence

Length
4452

1 Sequence Ontology Term

Identifier Name Description
transcript