WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56B6.2h.1 Sequence Name  F56B6.2h.1
Length (nt)  2994   Chromosome Location  X: 3542548-3557596
Chromosome . Primary Identifier  X Chromosome Location . Start  3542548
Chromosome Location . End  3557596 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56B6.2h.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004350 rgs-7 F56B6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56B6.2h F56B6.2h 2475   X: 3542631-3542673

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56B6.2h.1 3542548 3557596 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon228698   126   X: 3542548-3542673 Caenorhabditis elegans
Exon228702   115   X: 3542752-3542866 Caenorhabditis elegans
Exon228708   268   X: 3545556-3545823 Caenorhabditis elegans
Exon228711   126   X: 3546491-3546616 Caenorhabditis elegans
Exon228718   587   X: 3546665-3547251 Caenorhabditis elegans
Exon228723   72   X: 3547447-3547518 Caenorhabditis elegans
Exon228730   190   X: 3547569-3547758 Caenorhabditis elegans
Exon228733   99   X: 3547821-3547919 Caenorhabditis elegans
Exon228742   211   X: 3550061-3550271 Caenorhabditis elegans
Exon228750   128   X: 3552547-3552674 Caenorhabditis elegans
Exon228757   113   X: 3552814-3552926 Caenorhabditis elegans
Exon228768   134   X: 3556440-3556573 Caenorhabditis elegans
Exon228777   170   X: 3556632-3556801 Caenorhabditis elegans
Exon228786   125   X: 3556880-3557004 Caenorhabditis elegans
Exon228793   530   X: 3557067-3557596 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56B6.2h.1 3542548 3557596 1

1 Sequence

Length
2994

1 Sequence Ontology Term

Identifier Name Description
transcript