WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R11G1.4a.1 Sequence Name  R11G1.4a.1
Length (nt)  1781   Chromosome Location  X: 3646320-3650150
Chromosome . Primary Identifier  X Chromosome Location . Start  3646320
Chromosome Location . End  3650150 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R11G1.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004727 sax-1 R11G1.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R11G1.4a R11G1.4a 1431   X: 3646655-3646708

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R11G1.4a.1 3646320 3650150 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon228944   389   X: 3646320-3646708 Caenorhabditis elegans
Exon228945   119   X: 3647266-3647384 Caenorhabditis elegans
Exon228947   199   X: 3647430-3647628 Caenorhabditis elegans
Exon228949   113   X: 3647680-3647792 Caenorhabditis elegans
Exon228951   118   X: 3647843-3647960 Caenorhabditis elegans
Exon228953   165   X: 3648007-3648171 Caenorhabditis elegans
Exon228955   155   X: 3648215-3648369 Caenorhabditis elegans
Exon228957   208   X: 3649481-3649688 Caenorhabditis elegans
Exon228959   140   X: 3649744-3649883 Caenorhabditis elegans
Exon228961   109   X: 3649930-3650038 Caenorhabditis elegans
Exon228963   66   X: 3650085-3650150 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R11G1.4a.1 3646320 3650150 -1

1 Sequence

Length
1781

1 Sequence Ontology Term

Identifier Name Description
transcript