WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R11G1.4b.1 Sequence Name  R11G1.4b.1
Length (nt)  1777   Chromosome Location  X: 3646318-3650150
Chromosome . Primary Identifier  X Chromosome Location . Start  3646318
Chromosome Location . End  3650150 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R11G1.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004727 sax-1 R11G1.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R11G1.4b R11G1.4b 1425   X: 3646655-3646702

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R11G1.4b.1 3646318 3650150 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon228997   385   X: 3646318-3646702 Caenorhabditis elegans
Exon229000   119   X: 3647266-3647384 Caenorhabditis elegans
Exon229002   199   X: 3647430-3647628 Caenorhabditis elegans
Exon229004   113   X: 3647680-3647792 Caenorhabditis elegans
Exon229006   118   X: 3647843-3647960 Caenorhabditis elegans
Exon229008   165   X: 3648007-3648171 Caenorhabditis elegans
Exon229010   155   X: 3648215-3648369 Caenorhabditis elegans
Exon229012   208   X: 3649481-3649688 Caenorhabditis elegans
Exon229014   140   X: 3649744-3649883 Caenorhabditis elegans
Exon229016   109   X: 3649930-3650038 Caenorhabditis elegans
Exon229018   66   X: 3650085-3650150 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R11G1.4b.1 3646318 3650150 -1

1 Sequence

Length
1777

1 Sequence Ontology Term

Identifier Name Description
transcript