WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C01C4.2.1 Sequence Name  C01C4.2.1
Length (nt)  1628   Chromosome Location  X: 3715097-3718566
Chromosome . Primary Identifier  X Chromosome Location . Start  3715097
Chromosome Location . End  3718566 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C01C4.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015292 C01C4.2 C01C4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C01C4.2 C01C4.2 1362   X: 3715097-3715141

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C01C4.2.1 3715097 3718566 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon229252   45   X: 3715097-3715141 Caenorhabditis elegans
Exon229253   142   X: 3715187-3715328 Caenorhabditis elegans
Exon229254   96   X: 3715701-3715796 Caenorhabditis elegans
Exon229255   87   X: 3715846-3715932 Caenorhabditis elegans
Exon229256   127   X: 3715980-3716106 Caenorhabditis elegans
Exon229257   76   X: 3716155-3716230 Caenorhabditis elegans
Exon229258   90   X: 3716278-3716367 Caenorhabditis elegans
Exon229259   248   X: 3716418-3716665 Caenorhabditis elegans
Exon229260   161   X: 3717268-3717428 Caenorhabditis elegans
Exon229261   113   X: 3717540-3717652 Caenorhabditis elegans
Exon229262   83   X: 3717707-3717789 Caenorhabditis elegans
Exon229263   360   X: 3718207-3718566 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C01C4.2.1 3715097 3718566 1

1 Sequence

Length
1628

1 Sequence Ontology Term

Identifier Name Description
transcript