WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F47B7.2c.1 Sequence Name  F47B7.2c.1
Length (nt)  2104   Chromosome Location  X: 3772762-3778081
Chromosome . Primary Identifier  X Chromosome Location . Start  3772762
Chromosome Location . End  3778081 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F47B7.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018533 F47B7.2 F47B7.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F47B7.2c F47B7.2c 1875   X: 3772777-3772834

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F47B7.2c.1 3772762 3778081 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon229335   73   X: 3772762-3772834 Caenorhabditis elegans
Exon229342   137   X: 3773694-3773830 Caenorhabditis elegans
Exon229345   83   X: 3773880-3773962 Caenorhabditis elegans
Exon229348   112   X: 3774199-3774310 Caenorhabditis elegans
Exon229351   158   X: 3774365-3774522 Caenorhabditis elegans
Exon229354   343   X: 3774576-3774918 Caenorhabditis elegans
Exon229358   168   X: 3775169-3775336 Caenorhabditis elegans
Exon229361   114   X: 3775392-3775505 Caenorhabditis elegans
Exon229364   142   X: 3775557-3775698 Caenorhabditis elegans
Exon229367   350   X: 3776065-3776414 Caenorhabditis elegans
Exon229369   184   X: 3776683-3776866 Caenorhabditis elegans
Exon229373   240   X: 3777842-3778081 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F47B7.2c.1 3772762 3778081 1

1 Sequence

Length
2104

1 Sequence Ontology Term

Identifier Name Description
transcript