WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F47F2.1c.2 Sequence Name  F47F2.1c.2
Length (nt)  1438   Chromosome Location  X: 3878533-3893309
Chromosome . Primary Identifier  X Chromosome Location . Start  3878533
Chromosome Location . End  3893309 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F47F2.1c.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018569 F47F2.1 F47F2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F47F2.1c F47F2.1c 978   X: 3888674-3888743

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F47F2.1c.2 3878533 3893309 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon229519   53   X: 3878533-3878585 Caenorhabditis elegans
Exon229533   117   X: 3888487-3888603 Caenorhabditis elegans
Exon229539   91   X: 3888653-3888743 Caenorhabditis elegans
Exon229548   169   X: 3891077-3891245 Caenorhabditis elegans
Exon229557   90   X: 3891304-3891393 Caenorhabditis elegans
Exon229566   79   X: 3891487-3891565 Caenorhabditis elegans
Exon229575   95   X: 3891616-3891710 Caenorhabditis elegans
Exon229584   216   X: 3892467-3892682 Caenorhabditis elegans
Exon229593   136   X: 3892732-3892867 Caenorhabditis elegans
Exon229606   392   X: 3892918-3893309 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F47F2.1c.2 3878533 3893309 1

1 Sequence

Length
1438

1 Sequence Ontology Term

Identifier Name Description
transcript