WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F47F2.1c.1 Sequence Name  F47F2.1c.1
Length (nt)  1545   Chromosome Location  X: 3879762-3893309
Chromosome . Primary Identifier  X Chromosome Location . Start  3879762
Chromosome Location . End  3893309 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F47F2.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018569 F47F2.1 F47F2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F47F2.1c F47F2.1c 978   X: 3888674-3888743

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F47F2.1c.1 3879762 3893309 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon229521   160   X: 3879762-3879921 Caenorhabditis elegans
Exon229532   117   X: 3888487-3888603 Caenorhabditis elegans
Exon229538   91   X: 3888653-3888743 Caenorhabditis elegans
Exon229547   169   X: 3891077-3891245 Caenorhabditis elegans
Exon229556   90   X: 3891304-3891393 Caenorhabditis elegans
Exon229565   79   X: 3891487-3891565 Caenorhabditis elegans
Exon229574   95   X: 3891616-3891710 Caenorhabditis elegans
Exon229583   216   X: 3892467-3892682 Caenorhabditis elegans
Exon229592   136   X: 3892732-3892867 Caenorhabditis elegans
Exon229605   392   X: 3892918-3893309 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F47F2.1c.1 3879762 3893309 1

1 Sequence

Length
1545

1 Sequence Ontology Term

Identifier Name Description
transcript