WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C16B8.2.1 Sequence Name  C16B8.2.1
Length (nt)  2649   Chromosome Location  X: 3961824-3966432
Chromosome . Primary Identifier  X Chromosome Location . Start  3961824
Chromosome Location . End  3966432 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C16B8.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015822 C16B8.2 C16B8.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C16B8.2 C16B8.2 2505   X: 3961930-3962123

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C16B8.2.1 3961824 3966432 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon229787   300   X: 3961824-3962123 Caenorhabditis elegans
Exon229788   113   X: 3962190-3962302 Caenorhabditis elegans
Exon229789   265   X: 3962347-3962611 Caenorhabditis elegans
Exon229790   104   X: 3962967-3963070 Caenorhabditis elegans
Exon229792   156   X: 3963117-3963272 Caenorhabditis elegans
Exon229793   92   X: 3963319-3963410 Caenorhabditis elegans
Exon229794   94   X: 3963455-3963548 Caenorhabditis elegans
Exon229795   121   X: 3963596-3963716 Caenorhabditis elegans
Exon229796   137   X: 3963762-3963898 Caenorhabditis elegans
Exon229797   151   X: 3964252-3964402 Caenorhabditis elegans
Exon229798   53   X: 3964471-3964523 Caenorhabditis elegans
Exon229799   85   X: 3964565-3964649 Caenorhabditis elegans
Exon229800   76   X: 3964904-3964979 Caenorhabditis elegans
Exon229801   158   X: 3965025-3965182 Caenorhabditis elegans
Exon229802   105   X: 3965239-3965343 Caenorhabditis elegans
Exon229803   315   X: 3965388-3965702 Caenorhabditis elegans
Exon229804   123   X: 3965759-3965881 Caenorhabditis elegans
Exon229805   70   X: 3966185-3966254 Caenorhabditis elegans
Exon229806   131   X: 3966302-3966432 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C16B8.2.1 3961824 3966432 -1

1 Sequence

Length
2649

1 Sequence Ontology Term

Identifier Name Description
transcript