WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C07A12.3a.1 Sequence Name  C07A12.3a.1
Length (nt)  1917   Chromosome Location  X: 4532691-4537546
Chromosome . Primary Identifier  X Chromosome Location . Start  4532691
Chromosome Location . End  4537546 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C07A12.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003628 nhr-35 C07A12.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C07A12.3a C07A12.3a 1629   X: 4532691-4532901

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C07A12.3a.1 4532691 4537546 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon230939   211   X: 4532691-4532901 Caenorhabditis elegans
Exon230941   159   X: 4532951-4533109 Caenorhabditis elegans
Exon230943   100   X: 4533157-4533256 Caenorhabditis elegans
Exon230945   199   X: 4533830-4534028 Caenorhabditis elegans
Exon230947   129   X: 4534077-4534205 Caenorhabditis elegans
Exon230949   143   X: 4534386-4534528 Caenorhabditis elegans
Exon230951   125   X: 4534575-4534699 Caenorhabditis elegans
Exon230953   152   X: 4535169-4535320 Caenorhabditis elegans
Exon230955   121   X: 4535368-4535488 Caenorhabditis elegans
Exon230957   115   X: 4535536-4535650 Caenorhabditis elegans
Exon230959   78   X: 4537035-4537112 Caenorhabditis elegans
Exon230962   385   X: 4537162-4537546 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C07A12.3a.1 4532691 4537546 1

1 Sequence

Length
1917

1 Sequence Ontology Term

Identifier Name Description
transcript