WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C46C11.1a.1 Sequence Name  C46C11.1a.1
Length (nt)  3439   Chromosome Location  X: 4637121-4643695
Chromosome . Primary Identifier  X Chromosome Location . Start  4637121
Chromosome Location . End  4643695 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C46C11.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016704 hosl-1 C46C11.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46C11.1a C46C11.1a 2832   X: 4637335-4637532

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C46C11.1a.1 4637121 4643695 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon231221   412   X: 4637121-4637532 Caenorhabditis elegans
Exon231223   118   X: 4638276-4638393 Caenorhabditis elegans
Exon231225   73   X: 4638444-4638516 Caenorhabditis elegans
Exon231227   163   X: 4639474-4639636 Caenorhabditis elegans
Exon231229   357   X: 4640162-4640518 Caenorhabditis elegans
Exon231231   282   X: 4640617-4640898 Caenorhabditis elegans
Exon231233   145   X: 4641271-4641415 Caenorhabditis elegans
Exon231235   143   X: 4641459-4641601 Caenorhabditis elegans
Exon231237   225   X: 4641649-4641873 Caenorhabditis elegans
Exon231239   302   X: 4641927-4642228 Caenorhabditis elegans
Exon231241   81   X: 4642275-4642355 Caenorhabditis elegans
Exon231243   238   X: 4642409-4642646 Caenorhabditis elegans
Exon231245   294   X: 4642692-4642985 Caenorhabditis elegans
Exon231248   606   X: 4643090-4643695 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C46C11.1a.1 4637121 4643695 1

1 Sequence

Length
3439

1 Sequence Ontology Term

Identifier Name Description
transcript