WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C46C11.2.1 Sequence Name  C46C11.2.1
Length (nt)  1530   Chromosome Location  X: 4632361-4635780
Chromosome . Primary Identifier  X Chromosome Location . Start  4632361
Chromosome Location . End  4635780 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C46C11.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016705 slcr-46.1 C46C11.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46C11.2 C46C11.2 1446   X: 4632378-4632472

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C46C11.2.1 4632361 4635780 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon231262   112   X: 4632361-4632472 Caenorhabditis elegans
Exon231263   173   X: 4633022-4633194 Caenorhabditis elegans
Exon231264   75   X: 4633249-4633323 Caenorhabditis elegans
Exon231265   149   X: 4633373-4633521 Caenorhabditis elegans
Exon231266   121   X: 4634071-4634191 Caenorhabditis elegans
Exon231267   163   X: 4634238-4634400 Caenorhabditis elegans
Exon231268   152   X: 4634449-4634600 Caenorhabditis elegans
Exon231269   87   X: 4634929-4635015 Caenorhabditis elegans
Exon231270   125   X: 4635068-4635192 Caenorhabditis elegans
Exon231271   102   X: 4635302-4635403 Caenorhabditis elegans
Exon231272   105   X: 4635452-4635556 Caenorhabditis elegans
Exon231273   166   X: 4635615-4635780 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C46C11.2.1 4632361 4635780 1

1 Sequence

Length
1530

1 Sequence Ontology Term

Identifier Name Description
transcript