WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C39E6.1.1 Sequence Name  C39E6.1.1
Length (nt)  1916   Chromosome Location  X: 4738964-4749083
Chromosome . Primary Identifier  X Chromosome Location . Start  4738964
Chromosome Location . End  4749083 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C39E6.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003056 lon-2 C39E6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C39E6.1 C39E6.1 1527   X: 4739352-4739476

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C39E6.1.1 4738964 4749083 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon231509   513   X: 4738964-4739476 Caenorhabditis elegans
Exon231510   178   X: 4740411-4740588 Caenorhabditis elegans
Exon231512   52   X: 4744022-4744073 Caenorhabditis elegans
Exon231513   107   X: 4746133-4746239 Caenorhabditis elegans
Exon231514   183   X: 4746321-4746503 Caenorhabditis elegans
Exon231515   124   X: 4747066-4747189 Caenorhabditis elegans
Exon231516   165   X: 4747239-4747403 Caenorhabditis elegans
Exon231517   200   X: 4747451-4747650 Caenorhabditis elegans
Exon231518   149   X: 4747703-4747851 Caenorhabditis elegans
Exon231519   130   X: 4748233-4748362 Caenorhabditis elegans
Exon231520   115   X: 4748969-4749083 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C39E6.1.1 4738964 4749083 -1

1 Sequence

Length
1916

1 Sequence Ontology Term

Identifier Name Description
transcript