WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R08E3.4a.1 Sequence Name  R08E3.4a.1
Length (nt)  1355   Chromosome Location  X: 4807544-4811536
Chromosome . Primary Identifier  X Chromosome Location . Start  4807544
Chromosome Location . End  4811536 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R08E3.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019960 ztf-16 R08E3.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R08E3.4a R08E3.4a 1344   X: 4807544-4807831

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R08E3.4a.1 4807544 4811536 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon231557   288   X: 4807544-4807831 Caenorhabditis elegans
Exon231559   126   X: 4807880-4808005 Caenorhabditis elegans
Exon231561   180   X: 4808074-4808253 Caenorhabditis elegans
Exon231563   225   X: 4808446-4808670 Caenorhabditis elegans
Exon231566   90   X: 4809567-4809656 Caenorhabditis elegans
Exon231568   69   X: 4809821-4809889 Caenorhabditis elegans
Exon231571   92   X: 4810600-4810691 Caenorhabditis elegans
Exon231573   145   X: 4810795-4810939 Caenorhabditis elegans
Exon231575   56   X: 4811184-4811239 Caenorhabditis elegans
Exon231577   84   X: 4811453-4811536 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R08E3.4a.1 4807544 4811536 -1

1 Sequence

Length
1355

1 Sequence Ontology Term

Identifier Name Description
transcript