WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:R08E3.4a Sequence Name  R08E3.4a
Length (nt)  1344   Chromosome Location  X: 4807544-4807831
Chromosome . Primary Identifier  X Chromosome Location . Start  4807544
Chromosome Location . End  4807831
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R08E3.4a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE37662 ZTF-16, isoform a 50.4 447 Caenorhabditis elegans
 

Other

1 RNAi

WormBase ID
WBRNAi00051551

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
CDS:R08E3.4a 4807544 4807831 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019960 ztf-16 R08E3.4 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier 		Start End Strand
CDS:R08E3.4a 4807544 4807831 -1
CDS:R08E3.4a 4807880 4808005 -1
CDS:R08E3.4a 4808074 4808253 -1
CDS:R08E3.4a 4808446 4808670 -1
CDS:R08E3.4a 4809567 4809656 -1
CDS:R08E3.4a 4809821 4809889 -1
CDS:R08E3.4a 4810600 4810691 -1
CDS:R08E3.4a 4810795 4810939 -1
CDS:R08E3.4a 4811184 4811239 -1
CDS:R08E3.4a 4811453 4811525 -1

1 Sequence

Length
1344

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:R08E3.4a.1 R08E3.4a.1 1355   X: 4807544-4811536