WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R08E3.3a.1 Sequence Name  R08E3.3a.1
Length (nt)  1387   Chromosome Location  X: 4818599-4820817
Chromosome . Primary Identifier  X Chromosome Location . Start  4818599
Chromosome Location . End  4820817 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R08E3.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019959 R08E3.3 R08E3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R08E3.3a R08E3.3a 1368   X: 4818618-4818667

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R08E3.3a.1 4818599 4820817 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon231586   69   X: 4818599-4818667 Caenorhabditis elegans
Exon231587   63   X: 4818722-4818784 Caenorhabditis elegans
Exon231589   112   X: 4818841-4818952 Caenorhabditis elegans
Exon231591   127   X: 4819003-4819129 Caenorhabditis elegans
Exon231593   113   X: 4819186-4819298 Caenorhabditis elegans
Exon231595   267   X: 4819707-4819973 Caenorhabditis elegans
Exon231597   123   X: 4820021-4820143 Caenorhabditis elegans
Exon231599   114   X: 4820191-4820304 Caenorhabditis elegans
Exon231601   102   X: 4820353-4820454 Caenorhabditis elegans
Exon231604   297   X: 4820521-4820817 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R08E3.3a.1 4818599 4820817 1

1 Sequence

Length
1387

1 Sequence Ontology Term

Identifier Name Description
transcript