WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K05B2.5a.1 Sequence Name  K05B2.5a.1
Length (nt)  2799   Chromosome Location  X: 4921344-4929757
Chromosome . Primary Identifier  X Chromosome Location . Start  4921344
Chromosome Location . End  4929757 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K05B2.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003986 mct-4 K05B2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K05B2.5a K05B2.5a 2034   X: 4921938-4921967

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K05B2.5a.1 4921344 4929757 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon232087   624   X: 4921344-4921967 Caenorhabditis elegans
Exon232088   71   X: 4922018-4922088 Caenorhabditis elegans
Exon232093   126   X: 4922930-4923055 Caenorhabditis elegans
Exon232096   126   X: 4923105-4923230 Caenorhabditis elegans
Exon232100   162   X: 4923314-4923475 Caenorhabditis elegans
Exon232104   227   X: 4923528-4923754 Caenorhabditis elegans
Exon232108   254   X: 4924199-4924452 Caenorhabditis elegans
Exon232112   293   X: 4924502-4924794 Caenorhabditis elegans
Exon232116   231   X: 4925325-4925555 Caenorhabditis elegans
Exon232120   355   X: 4925604-4925958 Caenorhabditis elegans
Exon232124   143   X: 4926004-4926146 Caenorhabditis elegans
Exon232128   105   X: 4926828-4926932 Caenorhabditis elegans
Exon232134   82   X: 4929676-4929757 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K05B2.5a.1 4921344 4929757 -1

1 Sequence

Length
2799

1 Sequence Ontology Term

Identifier Name Description
transcript