WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZC449.3a.2 Sequence Name  ZC449.3a.2
Length (nt)  1804   Chromosome Location  X: 5017891-5021098
Chromosome . Primary Identifier  X Chromosome Location . Start  5017891
Chromosome Location . End  5021098 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZC449.3a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022613 sek-3 ZC449.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZC449.3a ZC449.3a 1116   X: 5018634-5018660

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZC449.3a.2 5017891 5021098 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon232355   150   X: 5017891-5018040 Caenorhabditis elegans
Exon232357   60   X: 5018395-5018454 Caenorhabditis elegans
Exon232359   64   X: 5018597-5018660 Caenorhabditis elegans
Exon232363   104   X: 5018716-5018819 Caenorhabditis elegans
Exon232366   169   X: 5018875-5019043 Caenorhabditis elegans
Exon232369   138   X: 5019090-5019227 Caenorhabditis elegans
Exon232372   120   X: 5019277-5019396 Caenorhabditis elegans
Exon232375   52   X: 5019511-5019562 Caenorhabditis elegans
Exon232378   128   X: 5019619-5019746 Caenorhabditis elegans
Exon232381   221   X: 5020227-5020447 Caenorhabditis elegans
Exon232385   598   X: 5020501-5021098 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZC449.3a.2 5017891 5021098 1

1 Sequence

Length
1804

1 Sequence Ontology Term

Identifier Name Description
transcript