WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T03G11.4.1 Sequence Name  T03G11.4.1
Length (nt)  2040   Chromosome Location  X: 5165395-5168783
Chromosome . Primary Identifier  X Chromosome Location . Start  5165395
Chromosome Location . End  5168783 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T03G11.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020197 mans-3 T03G11.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T03G11.4 T03G11.4 1755   X: 5165411-5165506

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T03G11.4.1 5165395 5168783 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon232740   112   X: 5165395-5165506 Caenorhabditis elegans
Exon232741   123   X: 5165553-5165675 Caenorhabditis elegans
Exon232742   175   X: 5165724-5165898 Caenorhabditis elegans
Exon232743   107   X: 5165956-5166062 Caenorhabditis elegans
Exon232744   79   X: 5166582-5166660 Caenorhabditis elegans
Exon232745   229   X: 5166855-5167083 Caenorhabditis elegans
Exon232747   212   X: 5167131-5167342 Caenorhabditis elegans
Exon232748   215   X: 5167386-5167600 Caenorhabditis elegans
Exon232749   189   X: 5167660-5167848 Caenorhabditis elegans
Exon232750   70   X: 5167895-5167964 Caenorhabditis elegans
Exon232751   529   X: 5168255-5168783 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T03G11.4.1 5165395 5168783 1

1 Sequence

Length
2040

1 Sequence Ontology Term

Identifier Name Description
transcript