WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y34B4A.8c.1 Sequence Name  Y34B4A.8c.1
Length (nt)  2436   Chromosome Location  X: 5271877-5279774
Chromosome . Primary Identifier  X Chromosome Location . Start  5271877
Chromosome Location . End  5279774 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y34B4A.8c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021324 rga-8 Y34B4A.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y34B4A.8c Y34B4A.8c 2130   X: 5272183-5272339

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y34B4A.8c.1 5271877 5279774 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon232986   463   X: 5271877-5272339 Caenorhabditis elegans
Exon232997   284   X: 5272398-5272681 Caenorhabditis elegans
Exon233005   241   X: 5272947-5273187 Caenorhabditis elegans
Exon233015   147   X: 5273238-5273384 Caenorhabditis elegans
Exon233025   129   X: 5273441-5273569 Caenorhabditis elegans
Exon233035   125   X: 5273619-5273743 Caenorhabditis elegans
Exon233045   203   X: 5273796-5273998 Caenorhabditis elegans
Exon233055   94   X: 5274259-5274352 Caenorhabditis elegans
Exon233065   155   X: 5274414-5274568 Caenorhabditis elegans
Exon233075   247   X: 5274616-5274862 Caenorhabditis elegans
Exon233085   87   X: 5274910-5274996 Caenorhabditis elegans
Exon233096   70   X: 5275066-5275135 Caenorhabditis elegans
Exon233103   52   X: 5275236-5275287 Caenorhabditis elegans
Exon233118   60   X: 5276516-5276575 Caenorhabditis elegans
Exon233124   69   X: 5278603-5278671 Caenorhabditis elegans
Exon233130   10   X: 5279765-5279774 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y34B4A.8c.1 5271877 5279774 -1

1 Sequence

Length
2436

1 Sequence Ontology Term

Identifier Name Description
transcript