WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F35C8.7a.1 Sequence Name  F35C8.7a.1
Length (nt)  2578   Chromosome Location  X: 5355648-5359947
Chromosome . Primary Identifier  X Chromosome Location . Start  5355648
Chromosome Location . End  5359947 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F35C8.7a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018037 chtl-1 F35C8.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F35C8.7a F35C8.7a 2316   X: 5355897-5356006

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F35C8.7a.1 5355648 5359947 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon233494   359   X: 5355648-5356006 Caenorhabditis elegans
Exon233496   72   X: 5356077-5356148 Caenorhabditis elegans
Exon233499   102   X: 5356205-5356306 Caenorhabditis elegans
Exon233502   145   X: 5357003-5357147 Caenorhabditis elegans
Exon233505   604   X: 5357202-5357805 Caenorhabditis elegans
Exon233508   417   X: 5358143-5358559 Caenorhabditis elegans
Exon233511   154   X: 5358609-5358762 Caenorhabditis elegans
Exon233514   284   X: 5358811-5359094 Caenorhabditis elegans
Exon233517   168   X: 5359367-5359534 Caenorhabditis elegans
Exon233520   273   X: 5359675-5359947 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F35C8.7a.1 5355648 5359947 -1

1 Sequence

Length
2578

1 Sequence Ontology Term

Identifier Name Description
transcript