WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F35C8.3.1 Sequence Name  F35C8.3.1
Length (nt)  3762   Chromosome Location  X: 5368468-5374174
Chromosome . Primary Identifier  X Chromosome Location . Start  5368468
Chromosome Location . End  5374174 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F35C8.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002177 jkk-1 F35C8.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F35C8.3 F35C8.3 1308   X: 5368665-5368698

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F35C8.3.1 5368468 5374174 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon233533   231   X: 5368468-5368698 Caenorhabditis elegans
Exon233536   108   X: 5369355-5369462 Caenorhabditis elegans
Exon233538   81   X: 5369613-5369693 Caenorhabditis elegans
Exon233540   111   X: 5369741-5369851 Caenorhabditis elegans
Exon233542   113   X: 5369900-5370012 Caenorhabditis elegans
Exon233544   117   X: 5370431-5370547 Caenorhabditis elegans
Exon233546   156   X: 5370594-5370749 Caenorhabditis elegans
Exon233548   165   X: 5370809-5370973 Caenorhabditis elegans
Exon233550   162   X: 5371245-5371406 Caenorhabditis elegans
Exon233552   93   X: 5371449-5371541 Caenorhabditis elegans
Exon233554   60   X: 5371590-5371649 Caenorhabditis elegans
Exon233557   1359   X: 5371703-5373061 Caenorhabditis elegans
Exon233569   926   X: 5373109-5374034 Caenorhabditis elegans
Exon233572   80   X: 5374095-5374174 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F35C8.3.1 5368468 5374174 1

1 Sequence

Length
3762

1 Sequence Ontology Term

Identifier Name Description
transcript