WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C41A3.2a.2 Sequence Name  C41A3.2a.2
Length (nt)  2521   Chromosome Location  X: 5406562-5411751
Chromosome . Primary Identifier  X Chromosome Location . Start  5406562
Chromosome Location . End  5411751 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C41A3.2a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016559 C41A3.2 C41A3.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C41A3.2a C41A3.2a 2337   X: 5406718-5407041

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C41A3.2a.2 5406562 5411751 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon233603   480   X: 5406562-5407041 Caenorhabditis elegans
Exon233605   56   X: 5407094-5407149 Caenorhabditis elegans
Exon233607   78   X: 5407194-5407271 Caenorhabditis elegans
Exon233610   246   X: 5407579-5407824 Caenorhabditis elegans
Exon233612   72   X: 5407867-5407938 Caenorhabditis elegans
Exon233615   266   X: 5407984-5408249 Caenorhabditis elegans
Exon233617   231   X: 5408313-5408543 Caenorhabditis elegans
Exon233620   183   X: 5408789-5408971 Caenorhabditis elegans
Exon233623   94   X: 5409027-5409120 Caenorhabditis elegans
Exon233626   263   X: 5409171-5409433 Caenorhabditis elegans
Exon233629   94   X: 5409917-5410010 Caenorhabditis elegans
Exon233632   83   X: 5410060-5410142 Caenorhabditis elegans
Exon233635   131   X: 5410192-5410322 Caenorhabditis elegans
Exon233638   89   X: 5410369-5410457 Caenorhabditis elegans
Exon233642   155   X: 5411597-5411751 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C41A3.2a.2 5406562 5411751 -1

1 Sequence

Length
2521

1 Sequence Ontology Term

Identifier Name Description
transcript